#! /bin/bash
#$ -N enum_3reag
#$ -tc 2
#$ -S /bin/bash
#$ -o $JOB_NAME_$TASK_ID.out
#$ -e $JOB_NAME_$TASK_ID.err
#$ -l h=!gimel

JOB_ID=${SLURM_ARRAY_JOB_ID}
TASK_ID=${SLURM_ARRAY_TASK_ID}
echo "${JOB_ID} ${TASK_ID}"

enumeration_script=$1
json_file=$2
dir1_file=$3
dir2_file=$4
DIR3=$5
output_lib_name_prefix=$6
WORKDIR=$7


BB3_file=$(ls $DIR3 | tr '\n' ' ' | cut -d' ' -f$TASK_ID)

BB3_path="${DIR3}/${BB3_file}"

source /nfs/home/nhadler/mambaforge/etc/profile.d/conda.sh
conda activate h3

cd ${WORKDIR}/output_libraries

python $enumeration_script $json_file $dir1_file $dir2_file ${BB3_path} ${output_lib_name_prefix}__${dir1_file##*/}__${dir2_file##*/}__${BB3_path##*/}